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03: Hard X-Ray Spectroscopy
 

OTHER DESIGNATIONS: Extended x-ray absorption fine structure (EXAFS) spectroscopy, x-ray absorption spectroscopy (XAS), near-edge x-ray absorption fine structure (NEXAFS) spectroscopy, x-ray absorption near-edge structure (XANES) spectroscopy, x-ray magnetic circular dichroism (XMCD).

PURPOSE: Hard x-ray spectroscopy is applied in a wide variety of scientific disciplines (physics, chemistry, life sciences, and geology) to investigate geometric and electronic structure. The method is element-, oxidation-state-, and symmetry-specific. It is a primary tool in the characterization of new and promising materials. It is also used in the elucidation of dilute chemical species of environmental concern.

HOW THE TECHNIQUE WORKS: In the simplest experimental set-up, the sample is mounted between two detectors, one of which measures the incident radiation and the other measures the transmitted radiation. The ratio of incident and transmitted signals is monitored as the photon energy is swept through element-specific core-level values (“edges”). There are two main variants of the technique depending on the range of the photon-energy sweep.

  1. EXAFS. A wide sweep of the photon energy above a core-level edge displays small oscillations in the absorption from which it is possible to deduce nearest-neighbor distances and nearest-neighbor numbers. The photoelectron wave released in the absorption process bounces back to the atom of origin not unlike the “ping” from a submarine sonar.
  2. NEXAFS. A narrow sweep near the core-level edge displays characteristic peaks in the spectrum that can serve as a “fingerprint” of the chemical bonding around the atom of origin.

UNIQUENESS: The seminal demonstration of the power of EXAFS in the early 1970s by Sayers, Lytle, and Stern has spawned a major scientific industry. The tunability of synchrotron radiation is essential for the sweeps across the core-level edges. The intensity of synchrotron radiation is essential for the detection of dilute species.

EXAMPLES:

Identification and Control of Radioactive Compounds in Hanford Waste Tanks
Interrogating the Silent Zinc Ion in Metalloenzymes
Room-Temperature Semiconductor for Spintronics





Identification and Control of Radioactive Compounds in Hanford Waste Tanks

vitrification diagram

Outline for vitrification of Hanford high-level waste. Separations are illustrated in red.
 

The Hanford nuclear waste site in southeastern Washington State is one of the most contaminated sites in the DOE complex. It stores millions of gallons of radioactive waste from the nation’s nuclear weapons programs. High-level radioactive waste is leaking from about a third of Hanford’s underground tanks. The waste includes the element technetium in the radioactive form of 99Tc, which poses a grave threat because of its long half-life (213,000 years) and its potential to contaminate ground water and migrate toward the Columbia River. Radioactive chemicals infiltrating the environment are a cancer hazard to humans. The proposed solution for remediating Tc is to chemically separate it from the tank wastes and store it in solid glass, a process called vitrification. But separating 99Tc into the proper phase before vitrification is proving difficult in some of the tanks because it forms unknown compounds in some storage conditions. To determine the identity of these unknown 99Tc compounds in the waste, scientists performed experiments using x-ray absorption spectroscopy, in which x-rays boost electrons in the sample to higher energy states to provide electronic and geometric structural information. Comparison of the experimental results to spectra from known compounds indicates that the unknown species is a Tc(I)-carbonyl complex. These results are extremely valuable because they indicate that technetium separation technologies must be effective for Tc(I)-carbonyl species.

W.W. Lukens, D.K. Shuh, N.C. Schroeder, and K.R. Ashley, “Identification of the non-pertechnetate species in Hanford waste tanks, Tc(I)-carbonyl complexes,” Env. Sci. Tech. 38, 229 (2004).




Interrogating the Silent Zinc Ion in Metalloenzymes

spectrum EXAFS

Zinc K-edge EXAFS as function of time.
 

Why do people need zinc in their diets? The metal zinc is an essential mineral that stimulates the activity of approximately 100 enzymes — substances that promote important biochemical reactions crucial to supporting the immune system, healing wounds, and synthesizing DNA. Changes in the local environment of the enzymatic zinc are important for understanding the different steps in the catalytic reaction. Classical enzymology and structural biology have provided insights into the reaction mechanisms of many metalloenzymes. However, little structural information is available on the catalysis of zinc-dependent enzymes, primarily because the zinc ion, with its fully filled 3d orbital, is “silent” for several spectroscopic techniques. Protein crystallography fails when investigating this problem since it depends on stable crystals; it also lacks the resolution to determine whether water molecules participate in the reaction. Using alcohol dehydrogenase from a thermophilic bacterium (T. brockii) as a representative zinc metalloenzyme, researchers have applied time-resolved extended x-ray absorption fine structure (EXAFS) spectroscopy to examine the structural and electronic changes that occur at the catalytic site of a zinc metalloenzyme. The results showed a series of changes in the number and distances of atoms surrounding the zinc ion, and these structural changes were reflected in the zinc’s effective charge. Furthermore, the data suggested that the enzymatic cycle has six steps, including the addition of a water molecule, the binding of alcohol, the formation of the ketone, and the dissociation of the product. The results emphasized the flexibility of zinc sites during catalysis.

O. Kleinfeld, A. Frenkel, J.M.L. Martin, and I. Sagi, “Active site electronic structure and dynamics during metalloenzyme catalysis,” Nat. Struct. Biol. 10, 98 (2003).




Room-Temperature Semiconductor for Spintronics

crystal model

Crystal model shows Co(II) (green) substituting for Ti(IV) (blue) in the lattice, with an oxygen (red) vacancy adjacent to the Co(II).
 

Ferromagnetic semiconductors that remain magnetic at and above room temperature are critical to the development of revolutionary spin-based electronics (or "spintronics"), technologies that manipulate electron spin, in addition to charge, to store and transmit information. Cobalt-doped TiO2 anatase is an oxide semiconductor that exhibits ferromagnetism well above room temperature. The thermally robust ferromagnetism is thought to be mediated by electrons from oxygen vacancies created by the substitution of cobalt for titanium (the oxygen vacancy is required to maintain local charge neutrality), but knowledge of the actual mechanism has been elusive. An understanding of the local structure of the magnetic dopant is critical to determining whether the magnetism is caused by elemental cobalt nanocrystals or whether cobalt is a magnetic dopant integrated into the host lattice. The latter is a necessary but insufficient condition for the material being a magnetic semiconductor. X-ray absorption near-edge structure (XANES) and extended x-ray absorption fine structure (EXAFS) spectroscopies were used to probe the charge state and local structure of cobalt dopants in TiO2 films. The researchers found that there was a significant but incomplete structural correlation between oxygen vacancies and substitutional Co(II) (cobalt in the +2 formal oxidation state). The results established that there was no detectable cobalt metal in the TiO2 films. The magnetism was correlated with the presence of substitutional Co(II) in the anatase lattice and free carriers resulting from excess oxygen vacancies. The results support, but do not prove, the contention that cobalt-doped TiO2 anatase is a true ferromagnetic semiconductor.

S.A. Chambers, S.M. Heald, and T. Droubay, "Local Co structure in epitaxial CoxTi1-xO2-x anatase," Phys. Rev. B 67, 100401 (2003).